convert.ides.output: Convert output of iDES step 1 to variant call format

In varitas: Variant Calling in Targeted Analysis Sequencing Data

Description

Convert output of iDES step 1 to variant call format

Usage

convert.ides.output(filename, output = TRUE,
  output.suffix = ".calls.txt", minreads = 5, mindepth = 50)

Arguments

filename	Path to file
output	Logical indicating whether output should be saved to file. Defaults to true.
output.suffix	Suffix to be appended to input filename if saving results to file
minreads	Minimum numbers of reads
mindepth	Minimum depth

Value

potential.calls Data frame of converted iDES calls

varitas documentation built on Nov. 14, 2020, 1:07 a.m.