prepare.vcf.specification: prepare.vcf.specification

In varitas: Variant Calling in Targeted Analysis Sequencing Data

Description

Prepare VCF specification data frame for annotation

Usage

prepare.vcf.specification(vcf.details, sample.id.column = 1,
  vcf.column = 2, job.dependency.column = NA, caller.column = NA)

Arguments

vcf.details	Data frame containing details of VCF files
sample.id.column	Identifier of column in vcf.details containing sample IDs (index or name)
vcf.column	Identifier of column in vcf.details containing VCF file (index or name)
job.dependency.column	Identifier of column in vcf.details containing job dependency (index or name)
caller.column	Identifier of column in vcf.details containing caller (index or name)

Value

Properly formatted VCF details

varitas documentation built on Nov. 14, 2020, 1:07 a.m.