filter.variants: Filter variant calls
In varitas: Variant Calling in Targeted Analysis Sequencing Data

Filter data frame of variant calls based on thresholds specified in settings.

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filter.variants(variants, caller = c("vardict", "ides", "mutect", "pgm",
  "consensus", "isis", "varscan", "lofreq"), config.file = NULL,
  verbose = FALSE)

`variants`	Data frame of variant calls with ANNOVAR annotation, or path to variant file.
`caller`	Name of caller used (needed to match appropriate filters from settings)
`config.file`	Path to config file to be used. If not supplied, will use the pre-existing VariTAS options.
`verbose`	Logical indicating whether to output descriptions of filtering steps. Defaults to False, useful for debugging.