get.coverage.by.amplicon: Process sample coverage per amplicon data
In varitas: Variant Calling in Targeted Analysis Sequencing Data
Description
Usage
Arguments
Value
References
View source: R/get.coverage.by.amplicon.R
Description
Parse coverageBed output to get coverage by amplicon
Usage
1
get.coverage.by.amplicon(project.directory)
Arguments
project.directory
Path to project directory. Each sample should have its own subdirectory
Value
combined.data Data frame giving coverage per amplicon per sample.
References
http://bedtools.readthedocs.io/en/latest/content/tools/coverage.html
varitas documentation built on Nov. 14, 2020, 1:07 a.m.
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Description Usage Arguments Value References
View source: R/get.coverage.by.amplicon.R
Description
Parse coverageBed output to get coverage by amplicon
Usage
1 | get.coverage.by.amplicon(project.directory)
|
Arguments
project.directory |
Path to project directory. Each sample should have its own subdirectory |
Value
combined.data Data frame giving coverage per amplicon per sample.
References
http://bedtools.readthedocs.io/en/latest/content/tools/coverage.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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