Description Usage Arguments Value
View source: R/merge.variants.R
Merge variants from multiple callers and return a data frame of merged calls. By default filtering is also applied, although this behaviour can be turned off by setting apply.filters to FALSE.
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variant.specification |
Data frame containing details of file paths, sample IDs, and caller. |
apply.filters |
Logical indicating whether to apply filters. Defaults to TRUE. |
remove.structural.variants |
Logical indicating whether structural variants (including CNVs) should be removed. Defaults to TRUE. |
separate.consensus.filters |
Logical indicating whether to apply different thresholds to variants called by more than one caller (specified under consensus in config file). Defaults to FALSE. |
verbose |
Logical indicating whether to print information to screen |
Data frame
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