make.command.line.call: Make string with command line call from its individual...

In varitas: Variant Calling in Targeted Analysis Sequencing Data

Description

Make string with command line call from its individual components

Usage

make.command.line.call(main.command, options = NULL, flags = NULL,
  option.prefix = "--", option.separator = " ", flag.prefix = "--")

Arguments

main.command	String or vector of strings giving main part of command (e.g. "python test.py" or c("python", "test.py"))
options	Named vector or list giving options
flags	Vector giving flags to include.
option.prefix	String to preface all options. Defaults to "–"
option.separator	String to separate options form their values. Defaults to a single space.
flag.prefix	String to preface all flags. Defaults to "–"

Value

command string giving command line call

varitas documentation built on Nov. 14, 2020, 1:07 a.m.