API for CambridgeCentreForProteomics/camprotR
Processing, analysing and visualising CCP proteomics data
| Global functions | |
|---|---|
| add_PTM_positions | Man page Source code |
| add_peptide_positions | Man page Source code |
| add_site_sequence | Man page Source code |
| append_fasta | Man page Source code |
| camprotR | Man page |
| camprotR-package | Man page |
| center_normalise_to_ref | Man page Source code |
| check_uniprot_job | Source code |
| check_uniprot_release | Man page Source code |
| compare_IDs | Man page Source code |
| compare_sequences_per_protein | Man page Source code |
| compare_single_master | Man page Source code |
| count_features_per_protein | Man page Source code |
| dep_gene2cat | Man page |
| dep_results | Man page |
| determine_ancestor_function | Man page Source code |
| determine_offspring_function | Man page Source code |
| download_ccp_crap | Man page Source code |
| estimate_go_overrep | Man page Source code |
| estimate_incorporation | Man page Source code |
| expand_terms | Man page Source code |
| filter_TMT_PSMs | Man page Source code Source code |
| get_all_mappings | Man page Source code |
| get_ancestor_go | Man page Source code |
| get_cat_palette | Man page Source code |
| get_ccp_crap | Man page Source code |
| get_enriched_go | Man page Source code |
| get_incorporation | Man page Source code |
| get_medians | Man page Source code |
| get_notch_per_protein | Man page Source code |
| get_parsimony_pep2prot | Man page Source code |
| get_psm_metrics | Man page Source code |
| get_psm_silac_mod_regex | Man page Source code |
| get_ratio | Man page Source code |
| get_sequence | Man page Source code |
| get_sequence2protein | Man page Source code |
| lfq_oops_rnase_pep | Man page |
| lfq_oops_rnase_psm | Man page |
| make_fasta | Man page Source code |
| match_proteins | Man page Source code |
| message_parse | Source code |
| parse_PTM_scores | Man page Source code |
| parse_features | Man page Source code |
| pep_oops_1 | Man page |
| pep_oops_2 | Man page |
| pep_oops_3 | Man page |
| pep_oops_4 | Man page |
| pep_silac_p0 | Man page |
| pep_silac_p4 | Man page |
| plot_TMT_notch | Man page Source code |
| plot_below_notch_per_prot | Man page Source code |
| plot_fraction_below_notch_per_prot | Man page Source code |
| plot_go | Man page Source code |
| plot_incorporation | Man page Source code |
| plot_missing_SN | Man page Source code |
| plot_missing_SN_per_sample | Man page Source code |
| plot_quant | Man page Source code |
| psm_oops_1 | Man page |
| psm_oops_2 | Man page |
| psm_oops_3 | Man page |
| psm_oops_4 | Man page |
| psm_silac_p4 | Man page |
| psm_tmt_phospho | Man page |
| psm_tmt_total | Man page |
| psm_to_peptide_style_modifications | Man page Source code |
| read_infiles | Man page Source code |
| remove_dots | Man page Source code |
| remove_redundant_go | Man page Source code |
| remove_silac_modifications | Man page Source code |
| remove_x | Man page Source code |
| restrict_features_per_protein | Man page Source code |
| silac_psm_seq_int | Man page Source code |
| sub_crap | Man page Source code |
| theme_camprot | Man page Source code |
| theme_csd | Man page Source code |
| update_average_sn | Man page Source code |
