GreenleafLab/chromVAR: Chromatin Variation Across Regions

Determine variation in chromatin accessibility across sets of annotations or peaks. Designed primarily for single-cell or sparse chromatin accessibility data, e.g. from scATAC-seq or sparse bulk ATAC or DNAse-seq experiments.

Getting started

Package details

Bioconductor views GeneRegulation ImmunoOncology Sequencing SingleCell
Maintainer
LicenseMIT + file LICENSE
Version1.5.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("GreenleafLab/chromVAR")
GreenleafLab/chromVAR documentation built on Dec. 3, 2018, 4:07 p.m.