getFragmentsPerPeak: getFragmentsPerPeak

In GreenleafLab/chromVAR: Chromatin Variation Across Regions

Description

getFragmentsPerPeak

Usage

getFragmentsPerPeak(object)

## S4 method for signature 'SummarizedExperiment'
getFragmentsPerPeak(object)

## S4 method for signature 'MatrixOrmatrix'
getFragmentsPerPeak(object)

Arguments

object

SummarizedExperiment, matrix, or Matrix object

Value

vector with sum across rows of counts assay within chromVARCounts

Methods (by class)

• SummarizedExperiment: method for SummarizedExperiment object with counts assay

• MatrixOrmatrix: method for Matrix or matrix object

See Also

getFragmentsPerSample, getTotalFragments

Examples

# Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")

frags_per_peak <- getFragmentsPerPeak(mini_counts)

GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.