computeVariability: computeVariability

In GreenleafLab/chromVAR: Chromatin Variation Across Regions

Description

function to compute overall variability of motif sets across samples

Usage

computeVariability(object, bootstrap_error = TRUE, bootstrap_samples = 1000,
  bootstrap_quantiles = c(0.025, 0.975), na.rm = TRUE)

Arguments

object	output from computeDeviations
bootstrap_error	compute bootstrap confidence interval
bootstrap_samples	number of bootstrap samples to take
bootstrap_quantiles	quantiles for bootstrap
na.rm	remove NAs? default is true

Value

data.frame with columns for name, variability, bootstrap lower bound, bootstrap upper bound, raw p value, adjust p value.

Examples

# Load very small example results from computeDeviations
data(mini_dev, package = "chromVAR")
variability <- computeVariability(mini_dev)                        

GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.