plotDeviationsTsne: plotDeviationsTsne
In GreenleafLab/chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Value
Author(s)
Description
plots sample similarity tsne
Usage
1
2
plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL,
annotation_name = NULL, shiny = interactive())
Arguments
object
deviations result object
tsne
result from deviationsTsne
var_df
variability result
sample_column
column name for sample data – colData(object) – to be
used for coloring points
annotation_name
name of chromVAR annotation for coloring points
shiny
return shiny app? otherwise return static plots
Value
shiny app or plots
Author(s)
Alicia Schep
GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.
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Description Usage Arguments Value Author(s)
Description
plots sample similarity tsne
Usage
1 2 | plotDeviationsTsne(object, tsne, var_df = NULL, sample_column = NULL,
annotation_name = NULL, shiny = interactive())
|
Arguments
object |
deviations result object |
tsne |
result from |
var_df |
variability result |
sample_column |
column name for sample data – colData(object) – to be used for coloring points |
annotation_name |
name of chromVAR annotation for coloring points |
shiny |
return shiny app? otherwise return static plots |
Value
shiny app or plots
Author(s)
Alicia Schep
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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