Man pages for GreenleafLab/chromVAR
Chromatin Variation Across Regions

addGCBiasaddGCBias
annotationMatchesannotationMatches
assembleKmersassembleKmers
cbind-chromVARDeviations-methodcbind method for chromVARDeviations
chromVARchromVAR: A package for computing variability across sets of...
chromVARDeviations-classchromVARDeviations
chromVAR_themechromVAR_theme
computeDeviationscomputeDeviations
computeExpectationscomputeExpectations
computeVariabilitycomputeVariability
countsAccessors for the 'counts' slot of a SummarizedExperiment
deviationsdeviations
deviationScoresdeviationScores
deviationsCovariabilitydeviationsCovariability
deviationsTsnedeviationsTsne
differentialDeviationsdifferentialDeviations
differentialVariabilitydifferentialVariability
example_countsexample_counts
filterPeaksfilterPeaks
filterSamplesfilterSamples
filterSamplesPlotfilterSamplesPlot
getAnnotationCorrelationgetAnnotationCorrelation
getAnnotationsgetAnnotations
getAnnotationSynergygetAnnotationSynergy
getBackgroundPeaksgetBackgroundPeaks
getCisGroupsgetCisGroups
getCountsgetCounts
getFragmentsPerPeakgetFragmentsPerPeak
getFragmentsPerSamplegetFragmentsPerSample
getJasparMotifsgetJasparMotifs
getPeaksgetPeaks
getPermutedDatagetPermutedData
getSampleCorrelationgetSampleCorrelation
getSampleDepthsgetSampleDepths
getSampleDistancegetSampleDistance
getTotalFragmentsgetTotalFragments
makeBiasBinsmakeBiasBins
makePermutedSetsmakePermutedSets
matchKmersmatchKmers
mini_countsmini_counts
mini_devmini_dev
mini_ixmini_ix
plotDeviationsTsneplotDeviationsTsne
plotKmerMismatchplotKmerMismatch
plotVariabilityplotVariability
pwmDistancepwmDistance
rbind-chromVARDeviations-methodrbind method chromVARDeviations
readNarrowpeaksreadNarrowpeaks
GreenleafLab/chromVAR documentation built on Nov. 20, 2017, 4:49 a.m.