getTotalFragments: getTotalFragments
In GreenleafLab/chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Value
Methods (by class)
See Also
Examples
Description
getTotalFragments
Usage
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getTotalFragments(object)
## S4 method for signature 'SummarizedExperiment'
getTotalFragments(object)
## S4 method for signature 'MatrixOrmatrix'
getTotalFragments(object)
Arguments
object
SummarizedExperiment, matrix, or Matrix object
Value
sum of all counts within object
Methods (by class)
-
SummarizedExperiment: method for SummarizedExperiment object
with counts assay
-
MatrixOrmatrix: method for Matrix or matrix object
See Also
getFragmentsPerSample,
getFragmentsPerPeak
Examples
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# Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")
total_frags <- getTotalFragments(mini_counts)
GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.
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Description Usage Arguments Value Methods (by class) See Also Examples
Description
getTotalFragments
Usage
1 2 3 4 5 6 7 | getTotalFragments(object)
## S4 method for signature 'SummarizedExperiment'
getTotalFragments(object)
## S4 method for signature 'MatrixOrmatrix'
getTotalFragments(object)
|
Arguments
object |
SummarizedExperiment, matrix, or Matrix object |
Value
sum of all counts within object
Methods (by class)
-
SummarizedExperiment: method for SummarizedExperiment object with counts assay -
MatrixOrmatrix: method for Matrix or matrix object
See Also
getFragmentsPerSample,
getFragmentsPerPeak
Examples
1 2 3 | # Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")
total_frags <- getTotalFragments(mini_counts)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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