assembleKmers: assembleKmers

Description Usage Arguments Details Value

View source: R/kmers.R

Description

function to create de novo motifs from kmers based on deviations

Usage

1
assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)

Arguments

object

kmer chromVARDeviations object

threshold

variability threshold

p

p value threshold for inclusion of kmer

progress

show progress bar?

Details

function for assembling de novo kmers from kmer deviations

Value

list with (1) motifs: de novo motif matrices, (2) seed: seed kmer for de novo motif


GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.