assembleKmers: assembleKmers
In GreenleafLab/chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Details
Value
Description
function to create de novo motifs from kmers based on deviations
Usage
1
assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)
Arguments
object
kmer chromVARDeviations object
threshold
variability threshold
p
p value threshold for inclusion of kmer
progress
show progress bar?
Details
function for assembling de novo kmers from kmer deviations
Value
list with (1) motifs: de novo motif matrices, (2) seed: seed kmer
for de novo motif
GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.
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Description Usage Arguments Details Value
Description
function to create de novo motifs from kmers based on deviations
Usage
1 | assembleKmers(object, threshold = 1.5, p = 0.01, progress = TRUE)
|
Arguments
object |
kmer chromVARDeviations object |
threshold |
variability threshold |
p |
p value threshold for inclusion of kmer |
progress |
show progress bar? |
Details
function for assembling de novo kmers from kmer deviations
Value
list with (1) motifs: de novo motif matrices, (2) seed: seed kmer for de novo motif
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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