annotationMatches: annotationMatches
In GreenleafLab/chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
annotationMatches
Usage
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annotationMatches(object)
annotationMatches(object) <- value
## S4 method for signature 'SummarizedExperiment'
annotationMatches(object)
## S4 replacement method for signature 'SummarizedExperiment'
annotationMatches(object) <- value
Arguments
object
SummarizedExperiment with matches slot, see details
value
logical Matrix with annotation matches
Details
Will extract matrix from the "matches", "annotationMatches", or
"motif_matches" assay of a SummarizedExperiment
Value
logical matrix of annotation matches
Author(s)
Alicia Schep
Examples
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# load annotation matrix; result from matchMotifs
data(mini_ix, package = "chromVAR")
matches <- annotationMatches(mini_ix)
GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
annotationMatches
Usage
1 2 3 4 5 6 7 8 9 | annotationMatches(object)
annotationMatches(object) <- value
## S4 method for signature 'SummarizedExperiment'
annotationMatches(object)
## S4 replacement method for signature 'SummarizedExperiment'
annotationMatches(object) <- value
|
Arguments
object |
SummarizedExperiment with matches slot, see details |
value |
logical Matrix with annotation matches |
Details
Will extract matrix from the "matches", "annotationMatches", or "motif_matches" assay of a SummarizedExperiment
Value
logical matrix of annotation matches
Author(s)
Alicia Schep
Examples
1 2 3 | # load annotation matrix; result from matchMotifs
data(mini_ix, package = "chromVAR")
matches <- annotationMatches(mini_ix)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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