readNarrowpeaks: readNarrowpeaks
In GreenleafLab/chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Value
Description
Reads in peaks in narrowpeaks format, as output by macs2. Uses summit as
center of peak, and makes peak the given 'width'. By default removes
overlapping peaks to get set of peaks with no overlaps
Usage
1
readNarrowpeaks(filename, width = 500, non_overlapping = TRUE)
Arguments
filename
filename
width
desired width of peaks
non_overlapping
remove overlapping peaks
Value
GRanges-class
GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.
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Description Usage Arguments Value
Description
Reads in peaks in narrowpeaks format, as output by macs2. Uses summit as center of peak, and makes peak the given 'width'. By default removes overlapping peaks to get set of peaks with no overlaps
Usage
1 | readNarrowpeaks(filename, width = 500, non_overlapping = TRUE)
|
Arguments
filename |
filename |
width |
desired width of peaks |
non_overlapping |
remove overlapping peaks |
Value
GRanges-class
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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