differentialDeviations: differentialDeviations

Description Usage Arguments Value Author(s) Examples

View source: R/differential_tests.R

Description

Function to see whether deviations differ between groups

Usage

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differentialDeviations(object, groups, alternative = c("two.sided", "less",
  "greater"), parametric = TRUE)

Arguments

object

chromVARDeviations object

groups

either vector of groups or name of column in colData of object with group information

alternative

only used if there are two groups – two.sided or one sided test

parametric

use parametric test. alternatively will use kruskal wallace

Value

data.frame with p value and adjusted p value

Author(s)

Alicia Schep

Examples

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# Load very small example results from computeDeviations
data(mini_dev, package = "chromVAR")
difdev <- differentialDeviations(mini_dev, "Cell_Type")

GreenleafLab/chromVAR documentation built on Dec. 3, 2018, 4:07 p.m.