Description Usage Arguments Value Author(s) Examples

View source: R/differential_tests.R

Function to see whether deviations differ between groups

1 2 | ```
differentialDeviations(object, groups, alternative = c("two.sided", "less",
"greater"), parametric = TRUE)
``` |

`object` |
chromVARDeviations object |

`groups` |
either vector of groups or name of column in colData of object with group information |

`alternative` |
only used if there are two groups – two.sided or one sided test |

`parametric` |
use parametric test. alternatively will use kruskal wallace |

data.frame with p value and adjusted p value

Alicia Schep

1 2 3 | ```
# Load very small example results from computeDeviations
data(mini_dev, package = "chromVAR")
difdev <- differentialDeviations(mini_dev, "Cell_Type")
``` |

GreenleafLab/chromVAR documentation built on Dec. 3, 2018, 4:07 p.m.

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