differentialDeviations: differentialDeviations

In GreenleafLab/chromVAR: Chromatin Variation Across Regions

Description

Function to see whether deviations differ between groups

Usage

differentialDeviations(object, groups, alternative = c("two.sided", "less",
  "greater"), parametric = TRUE)

Arguments

object	chromVARDeviations object
groups	either vector of groups or name of column in colData of object with group information
alternative	only used if there are two groups – two.sided or one sided test
parametric	use parametric test. alternatively will use kruskal wallace

Value

data.frame with p value and adjusted p value

Author(s)

Alicia Schep

Examples

# Load very small example results from computeDeviations
data(mini_dev, package = "chromVAR")
difdev <- differentialDeviations(mini_dev, "Cell_Type")

GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.