getJasparMotifs: getJasparMotifs
In GreenleafLab/chromVAR: Chromatin Variation Across Regions
Description
Usage
Arguments
Details
Value
Examples
Description
Function to get motifs from JASPAR database
Usage
1
getJasparMotifs(species = "Homo sapiens", collection = "CORE", ...)
Arguments
species
Which species? use eithe jaspar code or latin name.
default is 'Homo sapiens'
collection
Which collection to use? default is 'CORE'
...
additional arguments to opts for
getMatrixSet
Details
Simply a wrapper function for getMatrixSet
that calls JASPAR2016 database using JASPAR2016
Value
PFMatrixList
Examples
1
motifs <- getJasparMotifs()
GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.
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Description Usage Arguments Details Value Examples
Description
Function to get motifs from JASPAR database
Usage
1 | getJasparMotifs(species = "Homo sapiens", collection = "CORE", ...)
|
Arguments
species |
Which species? use eithe jaspar code or latin name. default is 'Homo sapiens' |
collection |
Which collection to use? default is 'CORE' |
... |
additional arguments to opts for
|
Details
Simply a wrapper function for getMatrixSet
that calls JASPAR2016 database using JASPAR2016
Value
PFMatrixList
Examples
1 | motifs <- getJasparMotifs()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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