getFragmentsPerSample: getFragmentsPerSample

In GreenleafLab/chromVAR: Chromatin Variation Across Regions

Description

getFragmentsPerSample

Usage

getFragmentsPerSample(object)

## S4 method for signature 'SummarizedExperiment'
getFragmentsPerSample(object)

## S4 method for signature 'MatrixOrmatrix'
getFragmentsPerSample(object)

Arguments

object

SummarizedExperiment, matrix, or Matrix object

Value

vector with sum across columns of counts assay within chromVARCounts

Methods (by class)

• SummarizedExperiment: method for SummarizedExperiment object with counts assay

• MatrixOrmatrix: method for Matrix or matrix object

See Also

getFragmentsPerPeak, getTotalFragments

Examples

# Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")
frags_per_sample <- getFragmentsPerSample(mini_counts)

GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.