getFragmentsPerSample: getFragmentsPerSample

Description Usage Arguments Value Methods (by class) See Also Examples

Description

getFragmentsPerSample

Usage

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getFragmentsPerSample(object)

## S4 method for signature 'SummarizedExperiment'
getFragmentsPerSample(object)

## S4 method for signature 'MatrixOrmatrix'
getFragmentsPerSample(object)

Arguments

object

SummarizedExperiment, matrix, or Matrix object

Value

vector with sum across columns of counts assay within chromVARCounts

Methods (by class)

See Also

getFragmentsPerPeak, getTotalFragments

Examples

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# Load very small example counts (already filtered)
data(mini_counts, package = "chromVAR")
frags_per_sample <- getFragmentsPerSample(mini_counts)

GreenleafLab/chromVAR documentation built on Aug. 20, 2019, 11:39 a.m.