collapseEffectSizeLong: collapse effect size, give input table and group variate

In Japrin/sscVis: simpler single cell RNAseq data Visualization

collapse effect size, give input table and group variate

Description

collapse effect size, give input table and group variate

Usage

collapseEffectSizeLong(
  dat.long,
  mode.collapse = "comb",
  group.2nd = "group.2nd",
  th.adj.P = 0.01,
  th.dprime = 0.15
)

Arguments

dat.long	data.table; these columns are required: "geneID","aid","P.Value","adj.P.Val","sig","dprime","vardprime","group.2nd"
mode.collapse	character; collapse method. one of "min", "comb" [default: "comb"]
group.2nd	character; column of obj, used for collapse [default: NULL]
th.adj.P	double; threshold [default: 0.01]
th.dprime	double; threshold [default: 0.15]

Details

collapse effect size

Value

a gene table

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.