plotDotPlotFromGeneTable: plot a dotplot
In Japrin/sscVis: simpler single cell RNAseq data Visualization

plotDotPlotFromGeneTable

R Documentation

plot a dotplot

Description

plot a dotplot

Usage

plotDotPlotFromGeneTable(
  gene.tb,
  group.tb = NULL,
  out.prefix = NULL,
  mcls2Name = NULL,
  column.x = "meta.cluster",
  column.v = "comb.ES",
  column.size = NULL,
  clamp.v = c(-0.25, 0.5),
  clamp.size = c(-0.25, 0.5),
  func.scale.color = scale_colour_distiller,
  point.shape = 16,
  recipe = NULL,
  par.color = list(palette = "RdYlBu", breaks = c(-0.25, 0, 0.25, 0.5), direction = -1),
  par.size = list(breaks = c(-0.25, 0, 0.25, 0.5), range = c(0.2, 6), labels = c(-0.25,
    0, 0.25, 0.5), limits = c(-0.25, 0.5) * 1)
)

Arguments

`gene.tb`	data.table;
`group.tb`	data.table; columns including "geneID" and "Group" are required (default NULL)
`out.prefix`	character; output prefix. (default NULL)
`mcls2Name`	vector; cluster name conversion. (default NULL)
`column.x`	character; which column used for x. (default "meta.cluster")
`column.v`	character; which column used for color. (default "comb.ES")
`column.size`	character; which column used for dot size. (default NULL, same for column.v)
`clamp.v`	double vector; values for "v" will be clamped to the range defined by this parameter, such as c(-0.25,0.5). (default: c(-0.25,0.5) )
`clamp.size`	double vector; values for "size" will be clamped to the range defined by this parameter, such as c(-0.25,0.5). (default: NULL )
`func.scale.color`	function; scale_colour_xx. (default: scale_colour_distiller )
`point.shape`	integer; point shape. (default: 16 )
`recipe`	character; predefined recipe, such as "z.freq". (default: NULL )
`par.color`	list; parameters for scale_colour_distiller.
`par.size`	list; parameters for scale_size.