simple.removeBatchEffect: Modified from limma::removeBatchEffect, a little different...

In Japrin/sscVis: simpler single cell RNAseq data Visualization

Modified from limma::removeBatchEffect, a little different design matrix

Description

Modified from limma::removeBatchEffect, a little different design matrix

Usage

simple.removeBatchEffect(
  x,
  batch = NULL,
  covariates = NULL,
  block.size = NULL,
  ...
)

Arguments

x	matrix; samples in columns and variables in rows
batch	character; batch vector (default: NULL)
covariates	double; other covariates to adjust (default: NULL)
block.size	integer; block size. To process large matrix, each time a block of [INT] genes is processed (default: NULL)
...	parameters passed to lmFit

Details

Modified from limma::removeBatchEffect, a little different design matrix

Value

a matrix with dimention as input ( samples in rows and variables in columns)

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.