ssc.downsample: downsample

In Japrin/sscVis: simpler single cell RNAseq data Visualization

downsample

Description

downsample

Usage

ssc.downsample(
  obj,
  ncell.downsample = NULL,
  group.var = "majorCluster",
  rn.seed = 9999,
  priority = "",
  rd = "pca"
)

Arguments

obj	object of singleCellExperiment class
ncell.downsample	integer; for each group, number of cells downsample to. (default: NULL)
group.var	character; column in the colData(obj) used for grouping. (default: "majorCluster")
rn.seed	integer; random number seed (default: 9999)
priority	character; priority. (default: "")
rd	character; data reducedDim(obj, rd) will be used for distance calculation (default: "pca")

Details

return a downsampled object of singleCellExperiment class.

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.