matrix.waterfall: make the matrix looks like "waterfall" (typically genes...

In Japrin/sscVis: simpler single cell RNAseq data Visualization

make the matrix looks like "waterfall" (typically genes expression)

Description

make the matrix looks like "waterfall" (typically genes expression)

Usage

matrix.waterfall(
  dat,
  score.alpha = 1.5,
  clust.row = FALSE,
  clust.column = FALSE,
  waterfall.column = F,
  waterfall.row = F,
  type.return = "matrix",
  do.norm = T,
  ...
)

Arguments

dat	matrix; matrix
score.alpha	double; for row/column score; (default: 1.5)
clust.row	logical, character or dendrogram; passed to cluster_rows of Heatmap (default: FALSE)
clust.column	logical, character or dendrogram; passed to cluster_columns of Heatmap (default: FALSE)
waterfall.column	logical, order rows to make plot like waterfall (default: FALSE)
waterfall.row	logical, order rows to make plot like waterfall (default: FALSE)
type.return	character; return type; (default: "matrix")
do.norm	logical; normalized the data before calculating scores?; (default: TRUE)
...	parameters passed to run.cutreeDynamic

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.