ssc.scale: scale the data
In Japrin/sscVis: simpler single cell RNAseq data Visualization

ssc.scale

R Documentation

scale the data

Description

scale the data

Usage

ssc.scale(
  obj,
  gene.id,
  gene.symbol,
  assay.name = "norm_exprs",
  adjB = NULL,
  do.scale = F,
  block.size = NULL,
  val.padding = 0,
  add.padding = F
)

Arguments

`obj`	object of `singleCellExperiment` class
`gene.id`	should be in rownames(obj); genes to plot
`gene.symbol`	should be in rowData(obj)[,"display.name"]; genes to plot
`assay.name`	character; which assay (default: "exprs")
`adjB`	character; batch column of the colData(obj). (default: NULL)
`do.scale`	logical; whether scale the data. (default: F)
`block.size`	integer; block size. To process large matrix, each time a block of [INT] genes is processed (default: NULL)
`val.padding`	double; padding value. (default: 0)
`add.padding`	logical; whether assign padding value for genes not in obj. (default: F)