ssc.assay.zscore: scale the assay per gene

In Japrin/sscVis: simpler single cell RNAseq data Visualization

scale the assay per gene

Description

scale the assay per gene

Usage

ssc.assay.zscore(
  obj,
  assay.name = "exprs",
  assay.new = NULL,
  covar = "patient",
  n.cores = NULL,
  z.lo = NULL,
  z.hi = NULL
)

Arguments

obj	object of singleCellExperiment class
assay.name	character; which assay (default: "exprs")
assay.new	character; assay name to store the scaled- expression;if NULL, will be (assay.name).z (default: NULL)
covar	character; perform scale in cells grouping by covar (default: "patient")
n.cores	integer; number of cores used, if NULL it will be determined automatically (default: NULL)
z.lo	double; z-score lower boundary; if set, z-score lower than this will be set to this (default: NULL)
z.hi	double; z-score higher boundary; if set, z-score higher than this will be set to this (default: NULL)

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.