ssc.average.gene: calcualte the average expression of genes of each cell

In Japrin/sscVis: simpler single cell RNAseq data Visualization

calcualte the average expression of genes of each cell

Description

calcualte the average expression of genes of each cell

Usage

ssc.average.gene(
  obj,
  assay.name = "exprs",
  gene = NULL,
  ncell.downsample = NULL,
  avg = "mean",
  ret.type = "sce"
)

Arguments

obj	object of singleCellExperiment class
assay.name	character; which assay (default: "exprs")
gene	list; named list; NULL for all genes (default: NULL)
ncell.downsample	integer; for each group, number of cells downsample to. (default: NULL)
avg	character; average method. can be one of "mean", "diff", "zscore" . (default: "mean")
ret.type	character; return type. can be one of "data.melt", "data.cast", "data.mtx". (default: "data.melt")

Details

multiple average methods are implemented

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.