ssc.toLongTable: convert assay data to long format

In Japrin/sscVis: simpler single cell RNAseq data Visualization

convert assay data to long format

Description

convert assay data to long format

Usage

ssc.toLongTable(obj, gene.id, gene.symbol, assay.name = NULL, col.idx = NULL)

Arguments

obj	object of singleCellExperiment class
gene.id	should be in rownames(obj); genes to plot
gene.symbol	should be in rowData(obj)[,"display.name"]; genes to plot
assay.name	character; which assay. NULL for all assays. (default: NULL)
col.idx	character; output extra columns of the colData(obj). NULL for donnot output extra columns. (default: NULL)

Details

convert assay data to table of long format. It can be specified which genes and assays will be contained in the long table.

Value

Returns a data.table

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.