ssc.plot.silhouette: Wraper for silhouette()

In Japrin/sscVis: simpler single cell RNAseq data Visualization

Wraper for silhouette()

Description

Wraper for silhouette()

Usage

ssc.plot.silhouette(
  obj,
  cluster.label,
  reducedDim.name = "iCor.tsne",
  do.plot = T,
  ...
)

Arguments

obj	object of SingleCellExperiment
cluster.label	character; which column of colData of obj to used as cluster label.
reducedDim.name	character; which reducedDim to use. (default: "iCor.tsne")
do.plot	logical; whether plot
...	Arguments to be passed to plot()

Value

an object, sil, of class silhouette

Japrin/sscVis documentation built on March 5, 2025, 10:23 a.m.