Files in JinmiaoChenLab/uSORT
uSORT: A self-refining ordering pipeline for gene selection
DESCRIPTION
NAMESPACE
R/SPIN.r
R/Swanderlust.R
R/autoSPIN.r
R/monocle.R
R/uSORT_GUI.R
R/uSORT_GeneSelection.R
R/uSORT_main.R
R/uSORT_postProcess.R
R/uSort_preProcess.R
R/uSort_sorting_wrapper.R
inst/NEWS.Rd
inst/extdata/TPM_test.txt
inst/unitTests/test_Rwanderlust.R
man/EXP_to_CellDataSet.Rd
man/Rwanderlust.Rd
man/SPIN.Rd
man/STS_sorting.Rd
man/STS_sorting_wrapper.Rd
man/STS_sortingcost.Rd
man/autoSPIN.Rd
man/clusterGenes1.Rd
man/compareModels1.Rd
man/diff_test_helper1.Rd
man/differentialGeneTest1.Rd
man/distance.function.Rd
man/driving_force_gene_selection.Rd
man/elbow_detection.Rd
man/fluidigmSC_analyzeGeneDetection.Rd
man/fluidigmSC_identifyExpOutliers.Rd
man/fluidigmSC_isElementIgnoreCase.Rd
man/fluidigmSC_readLinearExp.Rd
man/fluidigmSC_removeGenesByLinearExpForAllType.Rd
man/fluidigmSC_removeGenesByLinearExpForAllType_log2.Rd
man/monocle_wrapper.Rd
man/neighborhood_sorting.Rd
man/neighborhood_sorting_wrapper.Rd
man/neighborhood_sortingcost.Rd
man/pca_gene_selection.Rd
man/sWanderlust.Rd
man/scattering_quantification_per_gene.Rd
man/sorting_method_parameter_GUI.Rd
man/summed_local_variance.Rd
man/summed_local_variance_cyclical.Rd
man/summed_local_variance_linear.Rd
man/trajectory_landmarks.Rd
man/uSORT_GUI.Rd
man/uSORT_parameters_GUI.Rd
man/uSORT_preProcess.Rd
man/uSORT_sorting_wrapper.Rd
man/uSORT_write_results.Rd
man/uSort.Rd
man/variability_per_gene.Rd
man/wanderlust_wrapper.Rd
tests/runTests.R
vignettes/driver_gene_profile.png
vignettes/preliminary_sort_distance.png
vignettes/preliminary_sorting_cell_type.png
vignettes/refined_sort_distance.png
vignettes/refined_sorting_cell_type.png
vignettes/uSORT_GUI.png
vignettes/uSORT_para_GUI.png
vignettes/uSORT_quick_start.Rmd
vignettes/uSORT_workflow.png
