uSORT_write_results: Resluts parsing for uSORT

In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection

Description

Save result object into a RData file. Save cell to cell distance heatmap for both preliminary and refined results. Creat plot of driver gene profiles on final ordering using heatmap.

Usage

uSORT_write_results(uSORT_results, project_name, result_directory)

Arguments

uSORT_results	Result object from uSort function, a list.
project_name	A prefix for the saving files.
result_directory	The path where to save the results.

Value

save the results.

Examples

dir <- system.file('extdata', package='uSORT')
file <- list.files(dir, pattern='.txt$', full=TRUE)
#remove the # symbol of the following codes to test
#uSORT_results <- uSORT(exprs_file = file,
# project_name = 'test',
# preliminary_sorting_method = 'autoSPIN',
# refine_sorting_method = 'sWanderlust',
# save_results = FALSE)
#uSORT_write_results(uSORT_results,
# project_name = 'test',
# result_directory = getwd())

JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.