wanderlust_wrapper: a wrapper of wanderlust for sWanderlust

In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection

Description

a wrapper of wanderlust for sWanderlust

Usage

wanderlust_wrapper(data, s, diffusionmap_components = 4, l = 15, k = 15,
  num_graphs = 1, num_waypoints = 150, waypoints_seed = 123,
  flock_waypoints = 2)

Arguments

data	Input data matrix.
s	The ID of starting point.
diffusionmap_components	Number of components from diffusion map used for wanderlust analysis, default is 4.
l	Number of nearest neighbors, default is 15.
k	Number of nearest neighbors for repeating graphs, default is 15, should be less than or equal to l.
num_graphs	Number of repreated graphs.
num_waypoints	Number of waypoint used for wanderlust, default is 150.
waypoints_seed	The seed for reproducing the results.
flock_waypoints	The number of times for flocking the waypoints, default is 2.

Value

sorted order.

Author(s)

Hao Chen

JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.