fluidigmSC_removeGenesByLinearExpForAllType: A gene trimming function
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Description
A gene trimming function removes genes whose average expression value is below the log2(threshold),
and also present in at least 10
Usage
1
2
fluidigmSC_removeGenesByLinearExpForAllType(log2ex_data, log2ex_avg_data,
threshold)
Arguments
log2ex_data
A data frame containing log2 tranformed expression values, with rownames of genes
and colnames of cells.
log2ex_avg_data
A data frame containing log2 tranformed average expression values for individual
gene.
threshold
A limit of detection in the unit of TPM/CPM/RPMK.
Value
A vector of character containing gene names of those passed the filtering.
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value
Description
A gene trimming function removes genes whose average expression value is below the log2(threshold), and also present in at least 10
Usage
1 2 | fluidigmSC_removeGenesByLinearExpForAllType(log2ex_data, log2ex_avg_data,
threshold)
|
Arguments
log2ex_data |
A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells. |
log2ex_avg_data |
A data frame containing log2 tranformed average expression values for individual gene. |
threshold |
A limit of detection in the unit of TPM/CPM/RPMK. |
Value
A vector of character containing gene names of those passed the filtering.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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