variability_per_gene: A utility function for scattering_quantification_per_gene
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Author(s)
Description
A utility function for scattering_quantification_per_gene which computes the degree
of scattering for single gene, whereby the value is computed by summing over the
local values of smaller local windows
Usage
1
2
variability_per_gene(logExp = NULL, min_expr = 0.1,
window_size_perct = 0.1, nonZeroExpr_perct = 0.1)
Arguments
logExp
a log-scale expression vector of a gene
min_expr
a minimum expression value
window_size_perct
a window size (in
dispersion level
nonZeroExpr_perct
a minimum amount of cells (in
expression, otherwise the associated window will be assigned to 0 disperson value
Value
integer
Author(s)
MaiChan Lau
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value Author(s)
Description
A utility function for scattering_quantification_per_gene which computes the degree of scattering for single gene, whereby the value is computed by summing over the local values of smaller local windows
Usage
1 2 | variability_per_gene(logExp = NULL, min_expr = 0.1,
window_size_perct = 0.1, nonZeroExpr_perct = 0.1)
|
Arguments
logExp |
a log-scale expression vector of a gene |
min_expr |
a minimum expression value |
window_size_perct |
a window size (in dispersion level |
nonZeroExpr_perct |
a minimum amount of cells (in expression, otherwise the associated window will be assigned to 0 disperson value |
Value
integer
Author(s)
MaiChan Lau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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