EXP_to_CellDataSet: A function for constructing a Monocle's CellDataSet object...
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Description
A function for constructing a Monocle's CellDataSet object from an expression matrix
Usage
1
EXP_to_CellDataSet(log2_exp = NULL, expression_data_raw = NULL, lod = 1)
Arguments
log2_exp
An log2 transformed expresssion matrix containing n-rows of cells and m-cols of genes.
expression_data_raw
A data frame containing raw expression values, with rownames of cells
and colnames of genes.
lod
A value of limit of detection in the unit of TPM/CPM/RPKM.
Value
A CellDataSet object.
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value
Description
A function for constructing a Monocle's CellDataSet object from an expression matrix
Usage
1 | EXP_to_CellDataSet(log2_exp = NULL, expression_data_raw = NULL, lod = 1)
|
Arguments
log2_exp |
An log2 transformed expresssion matrix containing n-rows of cells and m-cols of genes. |
expression_data_raw |
A data frame containing raw expression values, with rownames of cells and colnames of genes. |
lod |
A value of limit of detection in the unit of TPM/CPM/RPKM. |
Value
A CellDataSet object.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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