pca_gene_selection: Gene selection using PCA technique
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Examples
Description
Gene selection using PCA technique
Usage
1
Arguments
data
A matrix of data.frame with row.name of cells, and col.name of genes
Value
a vector of the names of selected genes.
Examples
1
2
3
4
5
dir <- system.file('extdata', package='uSORT')
file <- list.files(dir, pattern='.txt$', full=TRUE)
exprs <- uSORT_preProcess(exprs_file = file)
exp_trimmed <- t(exprs$exprs_log_trimed)
PCA_selected_genes <- pca_gene_selection(exp_trimmed)
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value Examples
Description
Gene selection using PCA technique
Usage
1 |
Arguments
data |
A matrix of data.frame with row.name of cells, and col.name of genes |
Value
a vector of the names of selected genes.
Examples
1 2 3 4 5 | dir <- system.file('extdata', package='uSORT')
file <- list.files(dir, pattern='.txt$', full=TRUE)
exprs <- uSORT_preProcess(exprs_file = file)
exp_trimmed <- t(exprs$exprs_log_trimed)
PCA_selected_genes <- pca_gene_selection(exp_trimmed)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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