fluidigmSC_analyzeGeneDetection: A gene detection function
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Description
A gene detection function computes the fraction of genes detected in each cell,
reproduced from FluidigmSC package.
Usage
1
fluidigmSC_analyzeGeneDetection(expression_data, threshold = 1)
Arguments
expression_data
A data frame containing raw expression values, with rownames of genes
and colnames of cells.
threshold
A limit of detection in the unit of TPM/CPM/RPMK.
Value
A data frame containing a column of number of genes detected, and a column of the
corresponding percentage of gene detection, rownames of cells.
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value
Description
A gene detection function computes the fraction of genes detected in each cell, reproduced from FluidigmSC package.
Usage
1 | fluidigmSC_analyzeGeneDetection(expression_data, threshold = 1)
|
Arguments
expression_data |
A data frame containing raw expression values, with rownames of genes and colnames of cells. |
threshold |
A limit of detection in the unit of TPM/CPM/RPMK. |
Value
A data frame containing a column of number of genes detected, and a column of the corresponding percentage of gene detection, rownames of cells.
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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