fluidigmSC_readLinearExp: An expression reading function
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Description
An expression reading function which imports expression data from .txt file, and then
computes log2 transformed data, reproduced from FluidigmSC package.
Usage
1
fluidigmSC_readLinearExp(exp_file = TRUE, lod = 1)
Arguments
exp_file
Input file name in txt format, with rownames of cells and colnames of genes.
lod
A value of limit of detection in the unit of TPM/CPM/RPKM. It will be used as the starting value
for outlier cell detection and the basis for removing scarce genes.
Value
A list containing expression_data_raw(data frame), log2ex_data(data frame),
and log2ex_avg_data(data frame).
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value
Description
An expression reading function which imports expression data from .txt file, and then computes log2 transformed data, reproduced from FluidigmSC package.
Usage
1 | fluidigmSC_readLinearExp(exp_file = TRUE, lod = 1)
|
Arguments
exp_file |
Input file name in txt format, with rownames of cells and colnames of genes. |
lod |
A value of limit of detection in the unit of TPM/CPM/RPKM. It will be used as the starting value for outlier cell detection and the basis for removing scarce genes. |
Value
A list containing expression_data_raw(data frame), log2ex_data(data frame),
and log2ex_avg_data(data frame).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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