neighborhood_sorting_wrapper: A wrapper function for Neighborhood sorting.
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Description
A wrapper function for Neighborhood sorting as proposed in [Tsafrir et al. 2005].
Usage
1
neighborhood_sorting_wrapper(expr, sigma_width = 1, no_randomization = 10)
Arguments
expr
An expresssion matrix containing n-rows of cells and m-cols of genes.
sigma_width
An integer number determining the degree of spread of the gaussian distribution which is used for computing weight matrix for Neighborhood sorting method.
no_randomization
An integer number indicating the number of repeated sorting, each of which uses a randomaly selected initial cell ordering.
Value
A list containing permutated.expr(data frame) and best.cost(a numeric value).
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
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Description Usage Arguments Value
Description
A wrapper function for Neighborhood sorting as proposed in [Tsafrir et al. 2005].
Usage
1 | neighborhood_sorting_wrapper(expr, sigma_width = 1, no_randomization = 10)
|
Arguments
expr |
An expresssion matrix containing n-rows of cells and m-cols of genes. |
sigma_width |
An integer number determining the degree of spread of the gaussian distribution which is used for computing weight matrix for Neighborhood sorting method. |
no_randomization |
An integer number indicating the number of repeated sorting, each of which uses a randomaly selected initial cell ordering. |
Value
A list containing permutated.expr(data frame) and best.cost(a numeric value).
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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