diff_test_helper1: A modified monocle's helper function
In JinmiaoChenLab/uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
Author(s)
Description
A modified monocle's function for 'diff_test_helper1' which includes more attempts
on finding models and also compute max. magnitude change in expression values predicted
by GLM model
Usage
1
2
diff_test_helper1(x, fullModelFormulaStr, reducedModelFormulaStr,
expressionFamily, lowerDetectionLimit = 0.1, type_ordering = "linear")
Arguments
x
an expression data
fullModelFormulaStr
a Monocle's model structure
reducedModelFormulaStr
a Monocle's model structure
expressionFamily
a Monocle's family character
lowerDetectionLimit
a threshold value
type_ordering
a character indicating the type of underlying cell progression,
i.e. linear or circular
Value
test_res a dataframe containing status of modeling and adjusted p-value
Author(s)
MaiChan Lau
JinmiaoChenLab/uSORT documentation built on May 7, 2019, 10:53 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s)
Description
A modified monocle's function for 'diff_test_helper1' which includes more attempts on finding models and also compute max. magnitude change in expression values predicted by GLM model
Usage
1 2 | diff_test_helper1(x, fullModelFormulaStr, reducedModelFormulaStr,
expressionFamily, lowerDetectionLimit = 0.1, type_ordering = "linear")
|
Arguments
x |
an expression data |
fullModelFormulaStr |
a Monocle's model structure |
reducedModelFormulaStr |
a Monocle's model structure |
expressionFamily |
a Monocle's family character |
lowerDetectionLimit |
a threshold value |
type_ordering |
a character indicating the type of underlying cell progression, i.e. linear or circular |
Value
test_res a dataframe containing status of modeling and adjusted p-value
Author(s)
MaiChan Lau
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.