Man pages for JinmiaoChenLab/uSORT
uSORT: A self-refining ordering pipeline for gene selection
| autoSPIN | A wrapper function for autoSPIN sorting method |
| clusterGenes1 | A modified monocle's function |
| compareModels1 | A modified monocle's function |
| differentialGeneTest1 | differential gene test |
| diff_test_helper1 | A modified monocle's helper function |
| distance.function | A distance function A distance function computes cell-to-cell... |
| driving_force_gene_selection | A feature/ gene selection function |
| elbow_detection | A elbow detection function |
| EXP_to_CellDataSet | A function for constructing a Monocle's CellDataSet object... |
| fluidigmSC_analyzeGeneDetection | A gene detection function |
| fluidigmSC_identifyExpOutliers | An outlier detection function |
| fluidigmSC_isElementIgnoreCase | A gene finding function |
| fluidigmSC_readLinearExp | An expression reading function |
| fluidigmSC_removeGenesByLinearExpForAllType | A gene trimming function |
| fluidigmSC_removeGenesByLinearExpForAllType_log2 | A gene trimming function |
| monocle_wrapper | A wrapper function for Monocle sorting method |
| neighborhood_sorting | A sorting function using the Neighborhood algorithm |
| neighborhood_sortingcost | A cost computation function for Neighborhood algorithm |
| neighborhood_sorting_wrapper | A wrapper function for Neighborhood sorting. |
| pca_gene_selection | Gene selection using PCA technique |
| Rwanderlust | R inplementation of wanderlust |
| scattering_quantification_per_gene | An expression scattering measurement function |
| sorting_method_parameter_GUI | GUI for sorting method paramters |
| SPIN | A wrapper function for SPIN sorting method |
| STS_sorting | A sorting function using the Side-to-Side (STS) algorithm |
| STS_sortingcost | A cost computation function for Side-to-Side (STS) algorithm |
| STS_sorting_wrapper | A wrapper function for Side-to-Side (STS) sorting. |
| summed_local_variance | A summed local variance function |
| summed_local_variance_cyclical | A summed local variance function for cyclical linear data... |
| summed_local_variance_linear | A summed local variance function for strictly linear data... |
| sWanderlust | sWanderlust |
| trajectory_landmarks | determining initial trajectory and landmarks |
| uSort | uSORT: A self-refining ordering pipeline for gene selection |
| uSORT_GUI | The user friendly GUI for 'uSORT-package' |
| uSORT_parameters_GUI | The GUI for inputting paramters for uSORT |
| uSORT_preProcess | A data loading and pre-processing function |
| uSORT_sorting_wrapper | wrapper of all avaliable sorting methods in uSORT |
| uSORT_write_results | Resluts parsing for uSORT |
| variability_per_gene | A utility function for scattering_quantification_per_gene |
| wanderlust_wrapper | a wrapper of wanderlust for sWanderlust |
