check_controlledCTs: Check controlled cell type names

View source: R/check_controlledCTs.R

check_controlledCTsR Documentation

Check controlled cell type names

Description

Check the cell types in 'controlledCT' exist at the relevant annotation level.

Usage

check_controlledCTs(ctd, controlledCTs, controlledAnnotLevel)

Arguments

ctd

Cell type data structure containing specificity_quantiles.

controlledCTs

Array of the celltype to be controlled for, e.g. c("Interneuron type 16","Medium Spiny Neuron).

controlledAnnotLevel

Annotation level of the celltypes being controlled for.

Value

Null output.


NathanSkene/MAGMA_Celltyping documentation built on Oct. 11, 2024, 7:19 a.m.