check_controlledCTs: Check controlled cell type names
In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics
View source: R/check_controlledCTs.R
check_controlledCTs R Documentation
Check controlled cell type names
Description
Check the cell types in 'controlledCT' exist
at the relevant annotation level.
Usage
check_controlledCTs(ctd, controlledCTs, controlledAnnotLevel)
Arguments
ctd
Cell type data structure containing
specificity_quantiles.
controlledCTs
Array of the celltype to be controlled for,
e.g. c("Interneuron type 16","Medium Spiny Neuron).
controlledAnnotLevel
Annotation level of the celltypes
being controlled for.
Value
Null output.
NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.
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View source: R/check_controlledCTs.R
| check_controlledCTs | R Documentation |
Check controlled cell type names
Description
Check the cell types in 'controlledCT' exist at the relevant annotation level.
Usage
check_controlledCTs(ctd, controlledCTs, controlledAnnotLevel)
Arguments
ctd |
Cell type data structure containing
|
controlledCTs |
Array of the celltype to be controlled for, e.g. c("Interneuron type 16","Medium Spiny Neuron). |
controlledAnnotLevel |
Annotation level of the celltypes being controlled for. |
Value
Null output.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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