check_inputs_to_magma_celltype_analysis: Check input to MAGMA cell type analyses

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Check input to MAGMA cell type analyses

Description

This code was functonalised because it is called by both baseline and conditional analysis.

Usage

check_inputs_to_magma_celltype_analysis(
  ctd,
  gwas_sumstats_path,
  upstream_kb,
  downstream_kb
)

Arguments

ctd	Cell type data structure containing specificity_quantiles.
gwas_sumstats_path	File path of the summary statistics file.
upstream_kb	How many kb upstream of the gene should SNPs be included?
downstream_kb	How many kb downstream of the gene should SNPs be included?

Value

Nothing returned but sends error if there is a fault with the arguments.

NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.