create_genesets: Create gene sets

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Create gene sets

Description

Support function for get_driver_genes.

Usage

create_genesets(
  res_input,
  n_genes = 100,
  spec_deciles = NULL,
  gene_col = "hgnc_symbol",
  verbose = TRUE
)

Arguments

res_input	Enrichment results output from calculate_celltype_enrichment_limma.
n_genes	Max number of genes to return.
spec_deciles	[Optional] Which specificity deciles to use from the CellTypeDataset.
gene_col	Column containing gene symbols.
verbose	Print messages.

NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.