enrichment_results: Example celltype enrichment results
In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics
enrichment_results R Documentation
Example celltype enrichment results
Description
Example results from celltype_associations_pipeline.
Usage
data("enrichment_results")
Format
An object of class list of length 1.
Source
#### Import data ####
magma_dirs <- MAGMA.Celltyping::import_magma_files(ids = "ieu-a-298")
ctd <- ewceData::ctd()
enrichment_results <- MAGMA.Celltyping::celltype_associations_pipeline(
magma_dirs = magma_dirs,
ctd = ctd,
ctd_species = "mouse",
ctd_name = "Zeisel2015",
run_linear = TRUE,
run_top10 = TRUE,
run_conditional = TRUE,
force_new = TRUE)
usethis::use_data(enrichment_results, overwrite = TRUE)
NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.
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| enrichment_results | R Documentation |
Example celltype enrichment results
Description
Example results from celltype_associations_pipeline.
Usage
data("enrichment_results")
Format
An object of class list of length 1.
Source
#### Import data ####
magma_dirs <- MAGMA.Celltyping::import_magma_files(ids = "ieu-a-298")
ctd <- ewceData::ctd()
enrichment_results <- MAGMA.Celltyping::celltype_associations_pipeline(
magma_dirs = magma_dirs,
ctd = ctd,
ctd_species = "mouse",
ctd_name = "Zeisel2015",
run_linear = TRUE,
run_top10 = TRUE,
run_conditional = TRUE,
force_new = TRUE)
usethis::use_data(enrichment_results, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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