drop_genes_within_mhc: Drop genes within MHC

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Drop genes within MHC

Description

Drop genes within MHC

Usage

drop_genes_within_mhc(geneLocFilePath, geneLocFilePathOut)

Arguments

geneLocFilePath	The gene loc file as downloaded from MAGMA website (e.g. NCBI37.3.gene.loc).
geneLocFilePathOut	The file path to write the gene loc file with MHC removed.

Value

Null (the output is written to the filepath provided as an argument).

Examples

gene_loc <- MAGMA.Celltyping:::get_genomeLocFile(build = "GRCH37")
MAGMA.Celltyping::drop_genes_within_mhc(geneLocFilePath = gene_loc,
                                        geneLocFilePathOut = gene_loc)

NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.