get_example_magma_files: Get example MAGMA files

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Get example MAGMA files

Description

Get example MAGMA files generated by map_snps_to_genes.

Usage

get_example_magma_files(
  file_types,
  storage_dir = tempdir(),
  nested = FALSE,
  verbose = TRUE
)

Arguments

file_types	MAGMA file types to import. Both ".genes.out" and ".genes.raw" are needed to run MAGMA.Celltyping cell-type enrichment functions
storage_dir	Directory to store files in.
nested	Return files as a list nested by id (default: FALSE).
verbose	Print messages.

NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.