compare_trait_enrichments: Test to see which cell types are more enriched in magmaPath2...

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Test to see which cell types are more enriched in magmaPath2 than magmaPath1

Description

Test to see which cell types are more enriched in magmaPath2 than magmaPath1

Usage

compare_trait_enrichments(
  magmaPath1 = NA,
  magmaPath2 = NA,
  magma1 = NA,
  magma2 = NA,
  annotLevel,
  ctd
)

Arguments

magmaPath1	A magma results file
magmaPath2	A magma results file
magma1	A magma results data structure
magma2	A magma results data structure
annotLevel	Annotation level of the CTD / results file to use
ctd	Cell type data structure containing $specificity_quantiles

Value

File path for the genes.out file

NathanSkene/MAGMA_Celltyping documentation built on Aug. 21, 2023, 8:55 a.m.