format_sumstats_for_magma: Format GWAS summary statistics
In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics
View source: R/format_sumstats_for_magma.r
format_sumstats_for_magma R Documentation
Format GWAS summary statistics
Description
Check that sumstats has correct columns and that they are
in the correct order for MAGMA and LDSC.
Usage
format_sumstats_for_magma(path)
Arguments
path
Filepath for the summary statistics file to be formatted.
Value
col_headers The new column headers for the sumstats file
Examples
## Not run:
path <- MAGMA.Celltyping::get_example_gwas()
new_path <- MAGMA.Celltyping:::format.sumstats.for.magma(path)
## End(Not run)
NathanSkene/MAGMA_Celltyping documentation built on Oct. 11, 2024, 7:19 a.m.
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View source: R/format_sumstats_for_magma.r
| format_sumstats_for_magma | R Documentation |
Format GWAS summary statistics
Description
Check that sumstats has correct columns and that they are in the correct order for MAGMA and LDSC.
Usage
format_sumstats_for_magma(path)
Arguments
path |
Filepath for the summary statistics file to be formatted. |
Value
col_headers The new column headers for the sumstats file
Examples
## Not run:
path <- MAGMA.Celltyping::get_example_gwas()
new_path <- MAGMA.Celltyping:::format.sumstats.for.magma(path)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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