get_genome_ref_piggyback: Download genome ref: piggyback

In NathanSkene/MAGMA_Celltyping: Find Causal Cell-Types Underlying Complex Trait Genetics

Download genome ref: piggyback

Description

Download and decompress the genome reference needed to run map_snps_to_genes, If the file already exists, it will simply return the path.

Usage

get_genome_ref_piggyback(genome_ref_dir, verbose = TRUE, ...)

Arguments

genome_ref_dir	Folder to download reference to.
verbose	Print messages.
...	Arguments passed on to get_data repo Repository name in format "owner/repo". Defaults to guess_repo(). tag tag for the GitHub release to which this data should be attached. overwrite Should any local files of the same name be overwritten? default TRUE. .token GitHub authentication token, see ⁠[gh::gh_token()]⁠

Source

genome_ref_path <- get_genome_ref(method = "magma") piggyback::pb_upload(file = genome_ref_path, repo = "neurogenomics/MAGMA_Celltyping", overwrite = TRUE)

NathanSkene/MAGMA_Celltyping documentation built on Oct. 11, 2024, 7:19 a.m.